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Tips and hints for
Writing Scientific Papers

by
Mike BRILEY

NeuroBiz Consulting & Communications, Castres, France


General Comments
Format and style
Title
Abstract
Introduction
Methods
Results
Discussion
Tables and Figures
References

General Comments
Usually the only tangible remains of a scientific or clinical experiment is a publication in a scientific journal. Logically, therefore, as much effort and consideration should be given to writing the paper as was given to the planning and execution of the study.
The following guidelines are designed to help the inexperienced author to get his work published and appreciated by his peers. They are very general and should be seen as general advice and not unbreakable rules.

Format and style
All journals have their own style and they all publish "Instructions to Authors" which should be followed closely. These are nearly all available on the Internet. In addition reading papers on similar subjects in the chosen journal will give you a feel for the journal style in terms of degree of detail, preferred language style, use of British or American spelling and so on.
The following format is a typical one but significant differences exist between journals. Most research papers consist of the following elements: Title, Abstract, Introduction, Methods, Results, Discussion, References. Some sections are sometimes combined or absent in the case of shorter publications (rapid publications, case reports etc).
With the exception of the discussion and conclusions, scientific papers are written in the past tense, which is logical since the experiments have already been carried out. The discussion, conclusion and other generalisations are expressed in the present tense.
"Imipramine caused hair loss in 90% of the patients in this study. Caution is therefore required when using antidepressants in this type of patient".
For reasons of modesty the passive tense is usually preferred to the first person.
"The results were analysed". The use of "we" is still found in some journals. "We used the t-test to analyse the results." In single author papers, however, the use of "I" ("I analysed the results" or worse still "I analysed my results") is not recommended. Similarly for reasons of modesty, the conditional tense is frequently used in the discussion and conclusions. The use of softening words such as "possible", "suggest", "infer" etc are preferred to absolute terms like "proves" ("These results would suggest…" rather than "Our (or my) results prove…").
Inevitably there will be times when a manuscript will be rejected from a journal. You may decide to submit it to another journal after modifications based on the referees' comments. In this case be very careful to completely revise and adapt it to the style of the new journal. Not only will the reference style probably have to be changed but very likely a number of other points as well. Failure to do so indicates to the Editor and referee of the new journal that this publication was prepared for a different journal and therefore probably rejected! It is not the "first impression" that you would like your work to make.

Title
The title should be informative and contain the essential keywords that will help other scientists to find your publication through Medline and other abstracting systems.
There are several style of titles:
1.
The effect of imipramine on hair loss in senile schizophrenics.
2. Imipramine increases hair loss in senile schizophrenics.
3. Imipramine and hair loss in senile schizophrenics. Implications for the long-term management of balding schizophrenics.
4. Does imipramine cause hair loss in senile schizophrenics?
The question style is often used for a paper with negative results ie when the answer is "No!"
Some journals specifically require a certain style. Others have a style that is "traditionally used" in their journal. As a humble beginner it is better to conform to a traditional style.

Abstract
The abstract is a condensation of the entire work described in the paper. It should be a self-contained unit capable of being understood without reference to the rest of the text since many people will read only this. In addition it should contain all the keywords that will help someone to find the publication through abstracting services.
The length is variable depending on the journal. Wherever possible it should contain the following elements:

- the purpose of the study, including, if necessary, a very brief (one sentence state of the art) "Fibromyalgia is a disorder of unknown cause."
- a brief description of what was done (a summary of the Methods)
- a brief statement of what was found (summary of the results) giving key numbers (including statistics if the journal style allows)
- a short conclusion possibly including a very brief implication.
Abbreviations should be avoided.

Introduction
The introduction presents the question being asked and places it in the context of what is already known about the topic. It also contains background information that explains why the topic is of interest and refers to other publications. It should not be an exhaustive review of the subject.
In general, I prefer to keep the introduction short and to put most background material into the discussion. The introduction typically finishes with a simple statement of the purpose of the study.
"This study investigates the effect of chronic imipramine on hair density in senile schizophrenics."

Methods
Theoretically, the methods should be described in sufficient detail to enable an exact repetition of the study. The limited space available in a typical scientific paper often make this impossible but it should, however, remain an objective. All experimental procedures should be described or a literature reference given. Any variation from the published technique should be explained. Where multiple techniques have been used, most journals recommend the use of subheadings. No results should be given not even the lack of effect of controls. It can, however, be useful to explain the reason for certain parts of the procedure.
"Patients were allowed to play a computer game on the computer to reduce their apprehension and to familiarise them with the keyboard." Is preferable to "The patients played a computer game before each experiment."
The suppliers of unusual apparatus or non-standard chemicals should be provided to enable replication of the study. The statistical test used should be explained in the methods section.

Results
The function of this section is to summarize the data which are usually given in detail in tables or figures. It should not contain any comment or interpretation. The results of statistical tests applied to the data should be reported here.
Ideally
tables and figures should be fully comprehensible without reference to the text (except legends) and the text fully comprehensible without reference to the text or figures. In the confines of space of a scientific publication this is often difficult but should remain an ideal.
"After 6 months hair-loss was significantly (p< 0.05) greater in the imipramine-treated group (Fig. 1)" is preferred to "The effect of imipramine on hair-loss is shown in Figure 1".
Note the presentation of the results of statistical tests in parentheses following a description of the result .
All results should be presented, including those that do not support the hypothesis. Unsurprising results such as absence of change in the control group can, however, simply be stated without showing the detailed data in a table or figure.
"Patients in the non-senile group did not show signs of senility (data not shown)".

Discussion
This section analyzes the data and relates them to other studies. This analysis should refer to your original question or hypothesis and to point out any wider significance. Possible explanations should be proposed for unexpected results and observations. Trends that are not statistically significant can be briefly discussed if they are suggestive or interesting, but cannot be made the basis for any conclusions.
It is sometimes difficult to avoid redundancy between the Results and the Discussion sections. Do not repeat detailed descriptions of the data and results in the Discussion.
The Discussion should end with a summary sentence or two of the principal points you want the reader to remember. Many readers in a hurry will read only the title and the final paragraph of the discussion.

Tables and Figures
Tables and figures should be used to present data when they can do it more efficiently than text. They must be accompanied by explanatory legends or captions that allow them to be understood by someone who has not read the text. Usually figures convey meaning more readily than tables. They are always to be used where the relationship between values is important. Figures and Tables should be number independently.

Tables
Do not repeat the same data in a table and a figure.
It is easier to compare numbers by reading down a column rather than across a row. Therefore, list sets of data you want your reader to compare in vertical form.

Figures
These comprise graphs, histograms, and illustrations, both drawings and photographs. A descriptive legend or caption should explain what the figure shows without drawing conclusion.
Making figures that convey the information you want is quite a sophisticated subject and will be the subject of a future article in the Author's Corner.
Remember if you want to reproduce a figure that has already been published you need to ask the permission of the copyright holder, usually the publishers of the journal where it appeared. This is true even if you were the author yourself.

References
References should be cited throughout the manuscript at the relevant place in the text. The specific system of citation (authors and date
Briley et al., 2002 , by number32 or other system) depends on the journal and should be carefully followed. All references cited should be listed at the end of the publication in a format stipulated by the journal. Follow the journal style in detail. They will only send it back to be done again if you do not.
In a busy scientific area it is often difficult to decide who to cite. In general it is not worth citing old papers (more than 10 years old) if more recent work exists unless you are making a point about some original, historic finding. Reading papers published in the intended journal usually gives an idea of how extensive citation is in that journal.

Updated June 2003
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